Organism Information

The tables and links below list field isolates and different types of mutants for Desulfovibrio vulgaris, one of the primary organisms being studied by the VIMSS project.

  •  deletion mutants[detail table]
  •  tagged constructs
  •  transposon mutants  [detail table]
  •  field isolates
  •  mutants listed by DVU and VIMSS IDs

Click on the Local ID to display more information about the organism in a separate window, or click on the [detail table] links above or in the table headings to display a more detailed version of a table in a separate window.

Links to experimental data for laboratory analysis for wild-type Desulfovibrio vulgaris are available on the Experimental Data and Analysis Pipeline Summary page.

Notes

  1. The Local ID is the designation used by the laboratory that isolated the organism.
  2. The links in this column refer to experimental data generated by the VIMSS project.
    Key to acronyms:
    PC - protein complex, PM - phenotype microarray.
Desulfovibrio vulgaris Deletion Mutants  [detail table]
Local ID1 Gene Process VIMSS ID  Source  Confirmed?  Exp Data2 
 JW380 mnhA Ech hydrogenase, subunit EchA, putative  209370 Wall Lab, UMC N 
 JW381 nhaD membrane protein, putative  208955 Wall Lab, UMC N 
 JW382 nhaC-1 Na+/H+ antiporter NhaC  209317 Wall Lab, UMC N 
 JW383 nhaC-2 Na+/H+ antiporter NhaC  208626 Wall Lab, UMC N 
 JW385 cycA Cytochrome c3  208692 Wall Lab, UMC N 
 JW386 ung uracil-DNA glycosylase  209329 Wall Lab, UMC N 
 JW388 ung G20    392942 Wall Lab, UMC N 
 JW389 nhaD2 Na+/H+ antiporter  207844 Wall Lab, UMC N 
 JW390 rpoH cysteine-rich domain/iron-sulfur cluster-binding domain protein  207035 Wall Lab, UMC N 
 JW707 fur ferric uptake regulator  206374 Wall Lab, UMC N 
 JW708 perR peroxide-responsive regulator  208612 Wall Lab, UMC N 
 JW709 zur zinc uptake transcriptional regulator  206782 Wall Lab, UMC N 
[ top ]  
Desulfovibrio vulgaris Tagged Constructs
Local ID1 Gene Process VIMSS ID  Source  Exp Data2 
 JW903-0811 dnaK molecular chaperone  206238 Wall Lab, UMC  
 JW905-0846 ApsB adenylylsulphate reductase, beta subunit  206272 Wall Lab, UMC  
 JW907-0503 pnp polyribonucleotide nucleotidyltransferase  209440 Wall Lab, UMC PC[1], PC[2]
 JW907-1568 ftn ferritin  207018 Wall Lab, UMC  
 JW907-1577 HslV ATP-dependent protease hslV  207028 Wall Lab, UMC PC[1], PC[2], PC[3]
 JW907-2928 RpoB DNA-directed RNA polymerase, beta subunit  208438 Wall Lab, UMC PC[1], PC[2]
 JW907-2929 RpoC DNA-directed RNA polymerase, beta prime subunit  208439 Wall Lab, UMC PC[1], PC[2]
 JW913-1397 bfr bacterioferritin (cytochrome b1)  206840 Wall Lab, UMC  
[ top ]  
Desulfovibrio vulgaris Transposon Mutants  [detail table]
Local ID1 Gene Process VIMSS ID  Source  Exp Data2 
 JW3001  sensory box/GGDEF domain/EAL domain protein  208579 Wall Lab, UMC  
 JW3003 livG high-affinity branched-chain amino acid ABC transporter, ATP binding protein  209489 Wall Lab, UMC  
 JW3004  sensory box histidine kinase; Signal transduction histidine kinase regulating C4-dicarboxylate transport system  208043 Wall Lab, UMC  
 JW3006 lysA-1  diaminopimelate decarboxylase  207105 Wall Lab, UMC  
 JW3008  lipoprotein, putative  208081 Wall Lab, UMC  
 JW3009  ATP-dependent RNA helicase, DEAD/DEAH box family  209189 Wall Lab, UMC  
 JW3010 oorD Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)  208877 Wall Lab, UMC  
 JW3011  sensory box histidine kinase, putative  209265 Wall Lab, UMC  
 JW3012  sensory box histidine kinase  208671 Wall Lab, UMC  
 JW3013 sda L-serine dehydratase, putative  207626 Wall Lab, UMC  
 JW3014  Phosphoric diester hydrolases (hypothetical)  208693 Wall Lab, UMC  
 JW3015 nhaC-1 Na+/H+ antiporter NhaC  209317 Wall Lab, UMC  
 JW3016  outer membrane transport protein, OmpP1/FadL/TodX family  206996 Wall Lab, UMC  
 JW3017  hemolysin-type calcium-binding repeat/calx-beta domain protein  206993 Wall Lab, UMC  
 JW3018  methyl-accepting chemotaxis protein  208083 Wall Lab, UMC  
 JW3019 nhaD membrane protein, putative  208955 Wall Lab, UMC  
 JW3020 uvrB excinuclease ABC, B subunit  207056 Wall Lab, UMC  
 JW3021  sensory box/GGDEF domain/EAL domain protein  206857 Wall Lab, UMC  
 JW3022  alcohol dehydrogenase, iron-containing  207896 Wall Lab, UMC  
 JW3022  chemotaxis MotB protein, putative  208108 Wall Lab, UMC  
 JW3022  hydantoinase/oxoprolinase family protein  207724 Wall Lab, UMC  
 JW3023  nucleic acid-binding protein, putative  207618 Wall Lab, UMC  
 JW3024  methyl-accepting chemotaxis protein  208083 Wall Lab, UMC  
 JW3024  response regulator; Signal transduction histidine kinase  208078 Wall Lab, UMC  
 JW3025  conserved hypothetical protein   207718 Wall Lab, UMC  
 JW3026  radical SAM domain protein; Biotin synthase and related enzymes  207232 Wall Lab, UMC  
 JW3027  HDIG domain protein; Predicted membrane-associated HD superfamily hydrolase  207348 Wall Lab, UMC  
 JW3028 glpA anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation  208172 Wall Lab, UMC  
 JW3029  cobalt ABC transporter, ATP-binding protein, putative  208397 Wall Lab, UMC  
 JW3030  hypothetical protein  208915 Wall Lab, UMC  
 JW3031  hypothetical protein  206615 Wall Lab, UMC  
 JW3032  conserved hypothetical protein  208379 Wall Lab, UMC  
 JW3032  conserved hypothetical protein  209131 Wall Lab, UMC  
 JW3033     Wall Lab, UMC  
 JW3034 cooL hydrogenase, CooL subunit, putative  207775 Wall Lab, UMC  
 JW3035  CBS domain protein  208013 Wall Lab, UMC  
 JW3036  conserved hypothetical protein  207967 Wall Lab, UMC  
 JW3037 ppsA phosphoenolpyruvate synthase-related protein  209084 Wall Lab, UMC  
 JW3038     Wall Lab, UMC  
 JW3039  hypothetical protein  408334 Wall Lab, UMC  
 JW3040 prfC peptide chain release factor 3  208634 Wall Lab, UMC  
 JW3041 motB chemotaxis MotB protein, putative  208108 Wall Lab, UMC  
 JW3042  DNA internalization-related competence protein ComEC/Rec2  408365 Wall Lab, UMC  
 JW3043 zraP zinc resistance-associated protein  208912 Wall Lab, UMC  
 JW3044     Wall Lab, UMC  
 JW3045     Wall Lab, UMC  
 JW3046  adenine specific DNA methyltransferase, putative  209125 Wall Lab, UMC  
 JW3046  adenine specific DNA methyltransferase, putative  208387 Wall Lab, UMC  
 JW3047  sensor histidine kinase  206363 Wall Lab, UMC  
 JW3048     Wall Lab, UMC  
 JW3049  ErfK/YbiS/YcfS/YnhG family protein  208454 Wall Lab, UMC  
 JW3050 phsA thiosulfate reductase  209106 Wall Lab, UMC  
 JW3051 leuB 3-isopropylmalate dehydrogenase  208498 Wall Lab, UMC  
 JW3052  transcriptional regulator, putative  208024 Wall Lab, UMC  
 JW3052  phage portal protein, lambda family  209130 Wall Lab, UMC  
 JW3053  transcriptional regulator, putative  208024 Wall Lab, UMC  
 JW3054     Wall Lab, UMC  
 JW3055     Wall Lab, UMC  
 JW7001 xerD phage site-specific recombinase  207681 Wall Lab, UMC  
 JW7006  Fe-S cluster binding protein  206336 Wall Lab, UMC  
 JW7007  hypothetical transcriptional regulator for lysine biosynthesis  208064 Wall Lab, UMC  
 JW7008  phage tail tube protein  209144 Wall Lab, UMC  
 JW7008  phage tail tube protein  208366 Wall Lab, UMC  
 JW7011  terminase, small subunit  206950 Wall Lab, UMC  
 JW7013  hypothetical sulfur transfer protein involved in thiamine biosynthesis  206620 Wall Lab, UMC  
 JW7015 fabG oxidoreductase, short chain dehydrogenase/reductase family  208656 Wall Lab, UMC  
 JW7016 flgG flagellar basal-body rod protein  208402 Wall Lab, UMC  
 JW7017 nfo endonuclease IV  206663 Wall Lab, UMC  
 JW7018  HAMP domain/sigma54 interaction protein  209083 Wall Lab, UMC  
 JW7019  sensor histidine kinase  207886 Wall Lab, UMC  
 JW7020 thiF thiamine synthesis protein  209589 Wall Lab, UMC  
[ top ]  
Desulfovibrio vulgaris Field Isolates
Local ID1 Source  Comment  Exp Data2 
 DP1 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP2 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP3 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP4 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP5 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP6 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP7 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP8 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
 DP9 field (Lake DePue) strain of D. vulgaris isolated from a contaminated lake (Lake DePue) by David Stahl, UW  
[ top ]  
Hazen Lab Data Center | EDR Home | VIMSS Home
(requires password)

© 2007 The Arkin Lab | For more information about the Arkin Lab, contact Adam Arkin.
Comments/Questions | This site was last revised on August 5, 2007.