EIDR :: Experimental Information and Data Repository
QUICK LINKS:   About EIDR  |  EIDR FAQS  |  VIEW gene expression data  |  VIEW phenotype microarray data > 

 Browse data by ...
mouse over the  below to display the menus
experimental condition
organism
organism, experimental condition
organism, type of laboratory analyses
type of laboratory analyses
Status of data import 2007-02-10
EIDR Overview
EIDR is an information database for the ESPP project. It contains information about data generated by project participants, as well as links to data stored either in Biofiles or in the Experimental Data Repository.
EIDR references data files that have been uploaded to LBNL using Biofiles, custom Web interfaces, or ftp. Information about the data includes design information about biomass production experiments, information about the lab analyses that generated the data, and links to more detailed information, displays, or analyses. You can browse for data using the menus in the Browse data by ... table to the left.
Data Uploads as of 2007-02-10
Files uploaded to date 2,822
Datasets uploaded to date 292
Most recent data uploaded:
Phenotype microarray data for wild-type DvH, no stress, PM09 only, replicates I and II  [view report]
 Tools to view data/analyses
 •  Microarray database [M. Joachimiak]:
    view the results of analyzing microarray
    data
 •  Phenotype microarrays: plot phenotype
    microarray data as growth curves, or view
    data as color maps; compare data from
    different organisms or strains
 •  QA/QC data for ESPP CEB biomass
    production experiments:
plot and compare
    AODC (cell counts), optical density, and     protein data  [E26 to E48 only]
 
 
 Interfaces to upload data
 •  Biofiles [K. Keller]: create your own
    template to upload information and
    data files
 •  Omnilog MT: average replicates, plot
    averages, download results, and
    estimate generation times for single
    96-well plates
 
 
 
 
 
 
 Links to more information
 •  Index of ESPP pipeline/off-pipeline
    experiments:
biomass production
    and downstream lab analyses listed
    by stressor or design  [E28-E74 only]
 •  List of Desulfovibrio vulgaris
    mutants: mutants being engineered
    and studied for ESPP
 •  D. vulgaris pathway compounds:
    compilation of compounds from the
    KEGG and MetaCyc databases
 •  Study of Trace and Environmentally
    Important Metals on D. vulgaris
    Hildenborough [Johanne Jacobsen]
© 2007 VIMSS  |  MicrobesOnline  |  Comments/Questions about EIDR?  |  This page was last updated on April 5, 2007.